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Nanome v2

Home Science Chemistry Nanome v2
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🧬 Chemistry · Biology · Molecular Science · Drug Discovery · Meta Quest
🏛️ Peer-Reviewed · Used by Pharma R&D · Suffolk University Study

Nanome v2

Step inside molecular structures and hold them in your hands. Nanome v2 is a professional-grade collaborative molecular visualisation platform — built for drug discovery but used in university and school chemistry and biology classrooms worldwide. Load proteins from the RCSB PDB, build and edit molecules in 3D, collaborate with your whole team in the same virtual space, and let an AI guide your analysis. Free to download on Meta Quest.

FREE on Meta Quest Meta Quest 2/3/3S/Pro Nanome Inc. · San Diego Multiplayer collaboration AI assistant (MARA) v2.4 Early Access
Meta Store — Free nanome.ai
XR Rating
4.6
⭐⭐⭐⭐⭐
Platform: Meta Quest 2/3/3S/Pro  ·  Price: FREE  ·  Developer: Nanome Inc. (San Diego)  ·  Version: v2.4 Early Access  ·  Evidence: Peer-reviewed · Suffolk University (2025)
About the App

What is Nanome v2?

Nanome v2 is a professional-grade molecular visualisation and design platform for Meta Quest — the only VR tool of its kind used simultaneously by pharmaceutical R&D teams making billion-dollar drug discovery decisions and by university students learning protein structure for the first time. It is free to download on Meta Quest, developed by Nanome Inc. (San Diego), and as of v2.4.0 in January 2026 has transitioned from closed beta to early access on the Meta Quest Store.

The core concept is deceptively simple: put scientists and students inside the molecules they are studying. Load a protein from the RCSB Protein Data Bank, shrink it into your hands or grow it to room-scale, rotate it to inspect the binding pocket, mutate a residue and watch the geometry change in real time — all with colleagues standing next to you in the same virtual space, their pointers visible on the same structural features. This is molecular modelling as a spatial, physical, collaborative activity rather than a 2D screen interaction.

Why VR is the right medium for molecules: Molecular structures are three-dimensional objects. Proteins fold into shapes that determine their function. Binding pockets have geometries that determine what fits inside them. Drug design is an inherently spatial problem — yet for over 150 years, chemists have tried to solve it using two-dimensional images on paper and screens. Nanome puts scientists and students inside the actual 3D structure, enabling a spatial intuition that a textbook diagram or a flat-screen visualiser simply cannot provide.

The platform has been adopted by pharmaceutical and biotech companies worldwide and is described by its founder as building a "real-life JARVIS for scientists." In academia, it represents a significant leap beyond the physical molecular models invented by August Wilhelm von Hofmann in the 1860s — making molecular biology and organic chemistry immersive and interactive rather than static and symbolic.

Features — v2.4

What Can You Do in Nanome?

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3D Molecular Visualisation
Load proteins, small molecules, nucleic acids and chemical compounds from RCSB PDB, ChEMBL, AlphaFold DB and other databases. View in multiple representations — ball and stick, ribbon, surface, spacefill — and scale from hand-held to room-filling. High-quality surface rendering now computed server-side for exceptional binding pocket clarity.
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Build, Edit & Mutate
Build molecules from scratch using the Builder tool. Mutate amino acid residues in proteins and observe structural consequences in real time. Run ligand minimisation with MMFF94/UFF force fields. Measure distances, angles and dihedral angles with live preview that updates as you move through space.
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Real-Time Multiplayer Collaboration
Multiple users join the same workspace from different headsets worldwide. Each user's avatar and pointer are visible, with pointers positioned relative to the molecular structure so all collaborators see cursors pointing at the same structural features. Workspace joining requests make session management simple. A teacher can demonstrate to a whole class simultaneously.
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MARA — AI Molecular Assistant
Voice-controlled molecular visualisation via MARA (Molecular Analysis and Reasoning Assistant). Load and prepare molecular structures via conversation, transfer structures from the Molstar web visualiser directly to the headset, analyse binding poses, and automate complex workflows. Chat-driven file sharing between MARA and XR workspaces in v2.0.11.
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Professional Pipeline Integration
Integrates with Schrödinger LiveDesign, AutoDock Vina, DiffDock, AlphaFold DB, RCSB PDB, OpenFold, Boltz, ChEMBL, UniProt and more. Multi-frame playback for docking pose analysis and molecular dynamics review in XR. Designed to sit inside existing computational chemistry workflows, not replace them.
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Cloud-Native Workspaces
Nanome 2.0 features intuitive Workspaces with real-time cloud autosave. Load structures in a browser using Molstar, then push the workspace to your headset — seamlessly combining desktop preparation with immersive VR review. Optional MR passthrough on Quest 3 shows the real world behind the molecules.
Research Evidence

What Does the Research Show?

Nanome is one of the few VR science education tools with genuine peer-reviewed classroom research behind it. Researchers at Suffolk University in Boston published a study in Biochemistry and Molecular Biology Education (2025) documenting their approach to using Nanome in undergraduate biochemistry and molecular biology courses.

Suffolk University Study — Biochem Mol Biol Educ 2025
Berkmen, Balla, Cavanaugh et al. (2025) developed five detailed Nanome classroom exercises covering: protein secondary/tertiary/quaternary structure, active site properties, chirality of amino acids and ligand-enzyme interactions. Students used Meta Quest headsets with Nanome after initial training via the built-in tutorial.
100% of students reported activities were somewhat or very helpful in learning molecular structure
85% reported VR activities increased or moderately increased their interest in protein structure
Published resources: The Suffolk study includes instructor resources for implementing Nanome in class — exercises, assessment tools and setup guidance — all published under Creative Commons (CC BY 4.0) and freely available via the journal article (PubMed: 39936457).
Curriculum Fit

School & University Curriculum Value

GCSE Chemistry / Biology
72%
A-Level Chemistry / Biology
88%
University / HE Science
96%
Engagement
90%
Ease of use
65%

Nanome's primary educational sweet spot is A-Level and university-level chemistry and biology. At A-Level, molecular structure, bonding, protein function and enzyme interactions are all part of the specification, and Nanome makes these tangible in a way that no 2D diagram can. At university level it is a genuinely research-grade tool — the same platform used by pharmaceutical companies — making it uniquely motivating for science undergraduates. At GCSE level, the software is accessible for exploring basic molecular structures and introducing 3D molecular thinking, though the full feature set will exceed most GCSE students' immediate needs. Ease of use is rated 65% — the built-in tutorial covers the basics, but the software has a genuine learning curve and requires teacher orientation before classroom use. The Suffolk University exercises (freely available) provide an excellent ready-made curriculum structure for first deployments.

XR School Verdict
Scientific depth10/10
Education value (HE)10/10
Evidence base9/10
Collaboration10/10
Ease of use6/10
Value (it's free!)10/10
Bottom line: The most scientifically serious VR application available on Meta Quest — and it's free. Used by professional pharmaceutical R&D teams and now backed by peer-reviewed classroom research from Suffolk University. Best suited to A-Level and university science, but accessible to any teacher who wants students to genuinely hold molecular structures in their hands. Has a learning curve — use the Suffolk University exercises to structure your first sessions.
📄 Peer-Reviewed Research

Berkmen et al. (2025)
Biochemistry and Molecular Biology Education

5 classroom exercises covering protein structure, active sites, amino acid chirality and ligand-enzyme interactions. Instructor resources freely available.

PubMed: 39936457 →
Pros & Cons
✓ Completely free on Meta Quest
✓ Professional-grade — used by pharma R&D
✓ Peer-reviewed classroom research (2025)
✓ Real-time multiplayer collaboration
✓ Load from RCSB PDB, AlphaFold, ChEMBL
✓ MARA AI voice-controlled assistant
✓ MR passthrough on Quest 3
✓ Ready-made classroom exercises available
✗ Significant learning curve
✗ Best at A-Level and above
✗ Still in Early Access (v2.4)
✗ Full feature set needs teacher preparation
Quick Info
PlatformMeta Quest 2/3/3S/Pro
PriceFREE
DeveloperNanome Inc. · San Diego
Versionv2.4 Early Access
Multiplayer✓ Real-time
AI assistantMARA · voice control
MR support✓ Quest 3 passthrough
Data sourcesRCSB PDB · AlphaFold · ChEMBL
Best forA-Level · University · HE
ResearchPubMed 39936457 (2025)
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Nanome v2 · Free
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